ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR828
source: PMRD, original name: vvi-miR828a
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTGCTCAAATGAGTATTCCA miRNA* AGATGCTCATTTGAGGAAGCAA mismatches: 4 bulges: 0 |
pre-miRNA
TATAAAGTTTCTTGCTCAAATGAGTATTCCAAACAACAGCTTGTGAAGCAATGATTACTGTCATAGTCTCTGCATGTGGATTGTTGTTGAGATGCTCATT
TGAGGAAGCAACCTTAAAAATG
dot-bracket secondary structure
..(((.(((.(((.(((((((((((((..(((.(((((((((((((..(.(((((....))))).)..)).)))...)).)))))))))..)))))))))
)))).))).))).)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
TATAAAGTTTCTTGCTCAAATGAGTATTCCAAACAACAGCTTGTGAAGCAATGATTACTGTCATAGTCTCTGCATGTGGATTGTTGTTGAGATGCTCATT
TGAGGAAGCAACCTTAAAAATG
dot-bracket secondary structure
..(((.(((.(((.(((((((((((((..(((.(((((((((((((..(.(((((....))))).)..)).)))...)).)))))))))..)))))))))
)))).))).))).)))......
SIMILARITIES| miRBase vvi-MIR828a: 5e-65 PMRD vvi-miR828b: 0.00009 microPC no hits | UniProt no hits RFAM MIR828: 8e-55 |
Identical with: vvi-MIR828a from miRBase (MNEST041691) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
