ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIRf982
source: miRNEST
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATAGTGTAGCAAAGAGGGTT miRNA* CCATCTTTGCATGCTATAGT mismatches: 3 bulges: 1 |
pre-miRNA
AGTTGCAGAAGATAGTGTAGCAAAGAGGGTTCTTCGTGAGCATGTTAGGGAATCTCTTGGAGTAAGAAATGATGATCTACTTTTTGCCATCATAAATAGT
GTTTCACGTGGTAAAGGGCAAGATCTATTCCTTTATGCCTTTCATAAAAGTTTGCAGCTCATTCAGGAGAAGAAACTCAAGTTGCCATCTTTGCATGCTA
TAGTTGTAGGG
dot-bracket secondary structure
..((((((...(((((((.(((((((.(((.(((.(((((((((..(((((((((((((...)))))...)))(((((.(((((((((((..........
.......)))))))))))..)))))..))))).)))))...))))...(((((....(((......)))...))))).)))..))).)))))))))))))
)..))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGTTGCAGAAGATAGTGTAGCAAAGAGGGTTCTTCGTGAGCATGTTAGGGAATCTCTTGGAGTAAGAAATGATGATCTACTTTTTGCCATCATAAATAGT
GTTTCACGTGGTAAAGGGCAAGATCTATTCCTTTATGCCTTTCATAAAAGTTTGCAGCTCATTCAGGAGAAGAAACTCAAGTTGCCATCTTTGCATGCTA
TAGTTGTAGGG
dot-bracket secondary structure
..((((((...(((((((.(((((((.(((.(((.(((((((((..(((((((((((((...)))))...)))(((((.(((((((((((..........
.......)))))))))))..)))))..))))).)))))...))))...(((((....(((......)))...))))).)))..))).)))))))))))))
)..))))))..
SIMILARITIES| miRBase no hits PMRD ptc-miRf10923-akr: 1e-23 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
