miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha



ABOUT THIS RECORD

ID: MNEST000005
species: Actinidia chinensis
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Actinidia chinensis Actinidia Actinidiaceae Ericales asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTCTTCCTCGTCCTCTTCCT

miRNA*
GTGGGGGACCAGGGGGAGGCG

mismatches: 3
bulges: 0

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pre-miRNA
GTTCCGACGCTGGTGGGGGACCAGGGGGAGGCGTTGACGGGCTTCGTGGAAGAGCTGCTGAGCCCATTGGGCCTGCTCCTGCTGCCCATTGGGCTGCTCC
TTGTGATCCAGTTCCTCTCCTCGGCCCAGGGCTCCGTGGTGGCCGGAATATTCTCGACCGACGAGCCCGACTCCATCCACCGGGTCAGCGGGTCTCCCGT
GGGCGTCGCCCTCTTTCTCTTCCTCGTCCTCTTCCTCCTCTACAA


dot-bracket secondary structure
((....))...((.(((((((.(((((((((....((.((((..((.(((.(((..((((((((((.(((((..((....)).))))).)))))).....
........))))..)))))).))((((.((((((..((((....(((....)))..))))..))))))(((((........))))).(((((...)))))
))))...))))))..))))))))).))))))).))..........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM 7SK: 0.001
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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