miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bombus terrestris, Solenopsis invicta, Apis mellifera



ABOUT THIS RECORD

ID: MNEST035339
species: Apis mellifera
miRNA family: mir-1
source: miRBase, original name: ame-mir-1-2 (MI0015955)

Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAATGTAAAGAAGTATGGAG

miRNA*
CCGTGCTTCCTTACTTCCCATA

mismatches: 4
bulges: 0

View larger
pre-miRNA
CCGGGCGATGCTGTTCCGTGCTTCCTTACTTCCCATAGTGGATGCGACGTATGGAATGTAAAGAAGTATGGAGCTGCGCCCGG

dot-bracket secondary structure
(((((((.....((((((((((((.((((...(((((((.(...).)).)))))...)))).))))))))))))..)))))))


SIMILARITIES
miRBase ame-mir-1-1: 6e-42

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-1: 3e-35

Identical with: ame-mir-1-1 from miRBase (MNEST035338)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: array, RTPCR

references

[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"




Liczniki na strone;