ABOUT THIS RECORDspecies: Apis mellifera
miRNA family: mir-190
source: miRBase, original name: ame-mir-190 (MI0005750)
Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATATGTTTGATATTCTTGGTTGTT miRNA* CGACCAGGAATCAAACATATTATTA mismatches: 1 bulges: 3 |
pre-miRNA
CAAACAAGTCGTCTGGTTTCCGTAAGATATGTTTGATATTCTTGGTTGTTTTTTAAAGAATCGACCAGGAATCAAACATATTATTATGGTGGTCAGAAAA
dot-bracket secondary structure
...........((((..(.((((((((((((((((((..(((((((((.(((.....))).))))))))))))))))))))).)))))).)..))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
CAAACAAGTCGTCTGGTTTCCGTAAGATATGTTTGATATTCTTGGTTGTTTTTTAAAGAATCGACCAGGAATCAAACATATTATTATGGTGGTCAGAAAA
dot-bracket secondary structure
...........((((..(.((((((((((((((((((..(((((((((.(((.....))).))))))))))))))))))))).)))))).)..))))...
SIMILARITIES| miRBase aae-mir-190: 0.00000000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-190: 1e-43 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
