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Species belonging to selected taxon:

Acyrthosiphon pisum



ABOUT THIS RECORD

ID: MNEST035040
species: Acyrthosiphon pisum
miRNA family: bantam
source: miRBase, original name: api-bantam (MI0013356)

Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGATCATTGTGAAAGCTAATT

miRNA*
CTGGTTTTCACTTTGATCTGTCAGA

mismatches: 5
bulges: 2

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pre-miRNA
CGAAGCTGGTTTTCACTTTGATCTGTCAGATTTATCATTGTTCATTCTGAGATCATTGTGAAAGCTAATTT

dot-bracket secondary structure
......((((((((((..(((((..(((((...............))))))))))..))))))))))....


SIMILARITIES
miRBase bmo-bantam: 0.000000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM bantam: 1e-33

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"
[2] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"




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