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Species belonging to selected taxon:

Acyrthosiphon pisum



ABOUT THIS RECORD

ID: MNEST035099
species: Acyrthosiphon pisum
miRNA family: mir-1923
source: miRBase, original name: api-mir-1923 (MI0013357)

Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AATCGCGTACCGTTGCACAGTCGTGGC

miRNA*
CATTTAAAATGCTGGCTTCGATAACGTTTTTCA

mismatches: 9
bulges: 8

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pre-miRNA
AACTTGCCATTTAAAATGCTGGCTTCGATAACGTTTTTCAATAATATTTTAATGACTAATCGCGTACCGTTGCACAGTCGTGGCGG

dot-bracket secondary structure
....((((((.......((((((..((...((((...(((.(((....))).)))......))))..))..)).)))).)))))).


SIMILARITIES
miRBase bmo-mir-1923: 1e-24

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
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references

[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"




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