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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042558
species: Sorghum bicolor
miRNA family: MIR172
source: miRBase, original name: sbi-MIR172b (MI0001501)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAATCTTGATGATGCTGCA

miRNA*
TGGCATCATCAAGATTCACA

mismatches: 4
bulges: 0

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pre-miRNA
GCGTGGCATCATCAAGATTCACACACTGCTTGCAAATGCATACATGCATCTCTGCCGCCTTCTTTGCCTGCCATTAATAGCAGTTTTACTACATGTTTTA
GCTGCTGCTGCATCATATATGCCTCTGTGAATATATATGTGTATGTGTGGGAATCTTGATGATGCTGCAT


dot-bracket secondary structure
..(..(((((((((((((((.(((((.((..(((((((((....)))))..............))))..))......((((((((..((.....))...)
))))))).((((.((((((((..........)))))))))))).))))).)))))))))))))))..)..



SIMILARITIES
miRBase zma-MIR172e: 6e-16

PMRD sbi-miR172b: 2e-93

microPC miR172: 0.000009
UniProt no hits

RFAM mir-172: 3e-92

Identical with: sbi-miR172b from PMRD (MNEST054464)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"




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