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Species belonging to selected taxon:

Acyrthosiphon pisum, Aphis gossypii, Myzus persicae



ABOUT THIS RECORD

ID: MNEST035081
species: Acyrthosiphon pisum
miRNA family: mir-46
source: miRBase, original name: api-mir-281 (MI0013360)

Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTCATGGAGTTGCTCTCTTT

miRNA*
AGAGAGCTATCCGTCGACAGT

mismatches: 3
bulges: 2

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pre-miRNA
AAGAGAGCTATCCGTCGACAGTATAATTTTTAACTACACTGTCATGGAGTTGCTCTCTTTAT

dot-bracket secondary structure
((((((((..(((((.((((((.((.........)).)))))))))))...))))))))...


SIMILARITIES
miRBase tca-mir-281: 0.000000000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-281: 0.00000000005

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"




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