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Species belonging to selected taxon:

Acyrthosiphon pisum, Aphis gossypii, Myzus persicae



ABOUT THIS RECORD

ID: MNEST035079
species: Acyrthosiphon pisum
miRNA family: mir-279
source: miRBase, original name: api-mir-279a (MI0013924)

Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACTAGATCCACACTCATCC

miRNA*
ATGGGTGTGTGTCTAGTGACATG

mismatches: 4
bulges: 2

View larger
pre-miRNA
ATGGGTGTGTGTCTAGTGACATGCGTTTTATATTTGACAGACATGACTAGATCCACACTCATCC

dot-bracket secondary structure
(((((((((..((((((..((((((((........))).).))))))))))..)))))))))..


SIMILARITIES
miRBase lgi-mir-279: 0.000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-279: 2e-29

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"




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