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Species belonging to selected taxon:

Bombus terrestris, Apis mellifera



ABOUT THIS RECORD

ID: MNEST035382
species: Apis mellifera
miRNA family: mir-278
source: miRBase, original name: ame-mir-278 (MI0001586)

Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGTGGGACTTTCGTCCGTTT

miRNA*
CCGGATGAGGTCTTCATCGACC

mismatches: 2
bulges: 2

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pre-miRNA
TCACGAGTAGTGTGTCCGGATGAGGTCTTCATCGACCGTGATTTAATTTCATAAGGTCGGTGGGACTTTCGTCCGTTTGCAAGACTCGAGGA

dot-bracket secondary structure
...(((((..((((..((((((((((((.((((((((((((.......))))..)))))))))))).))))))))..))))..)))))....


SIMILARITIES
miRBase aga-mir-278: 0.00000007

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-278: 5e-46

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR

references

[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"




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