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Species belonging to selected taxon:
Bombus terrestris
,
Apis mellifera
ABOUT THIS RECORD
ID:
MNEST035388
species:
Apis mellifera
miRNA family:
mir-216
source:
miRBase, original name:
ame-mir-283
(
MI0005735
)
Taxonomy by NCBI:
Apis mellifera
Apis
Apini
Apinae
Apidae
Apoidea
Aculeata
Apocrita
Hymenoptera
Endopterygota
Neoptera
Pterygota
Dicondylia
Insecta
Hexapoda
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAATATCAGCTGGTAATTCT
miRNA*
GATTCTTGCTGGTATCCGG
mismatches:
3
bulges:
1
View larger
pre-miRNA
AATAATCTGGTGATGTAGTC
AAATATCAGCTGGTAATTCT
GGGATTTTGACAATAACCCAG
GATTCTTGCTGGTATCCGG
CTACGAACTGGACGATCGCC
dot-bracket secondary structure
.....((..((..(((((((
..((((((((.((.((((((
(((.((........)))))))
)))))).))))))))..))
))))).))..))........
SIMILARITIES
miRBase
ngi-mir-283
:
3e-16
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-283: 9e-45
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
RTPCR
references
[
1
] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG,
Genome Biol. 8:R97(2007).
,
"Computational and transcriptional evidence for microRNAs in the honey bee genome"