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Species belonging to selected taxon:

Apis mellifera



ABOUT THIS RECORD

ID: MNEST035344
species: Apis mellifera
miRNA family: mir-8
source: miRBase, original name: ame-mir-8 (MI0001595)

Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAATACTGTCAGGTAAAGATGTC

miRNA*
CATCTTACCGGGCAGCATTAGA

mismatches: 3
bulges: 1

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pre-miRNA
GGAGTATCTGTTCACATCTTACCGGGCAGCATTAGATTGAAGTTGACCTTCTAATACTGTCAGGTAAAGATGTCGTCAGGATTCC

dot-bracket secondary structure
(((((.((((...((((((((((.(((((.((((((.............)))))).))))).))).)))))))...)))))))))


SIMILARITIES
miRBase nlo-mir-8: 1e-24

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-8: 7e-36

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references

[1] Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F, Insect Mol Biol. 19:799-805(2010)., "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera"




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