miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Apis mellifera



ABOUT THIS RECORD

ID: MNEST035342
species: Apis mellifera
miRNA family: mir-2
source: miRBase, original name: ame-mir-2-3 (MI0005732)

Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATCACAGCCAGCTTTGATGAGC

miRNA*
CATCAAAGTTGGTTTGTCATAGA

mismatches: 2
bulges: 2

View larger
pre-miRNA
AAATATCCCCGGACAAGGACATGCTTTTACCATCAAAGTTGGTTTGTCATAGAGATCGACTATCACAGCCAGCTTTGATGAGCAAAATTGTGTCCGTCTA


dot-bracket secondary structure
..........((((..((((((..((((.(((((((((((((((.((.((((.......)))).)))))))))))))))).).))))..)))))))))).



SIMILARITIES
miRBase ngi-mir-2: 6e-27

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2: 5e-28

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR

references

[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"




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