miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Apis mellifera



ABOUT THIS RECORD

ID: MNEST035391
species: Apis mellifera
miRNA family: mir-67
source: miRBase, original name: ame-mir-307 (MI0016139)

Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACAACCTTTTTGAGTGAGCGA

miRNA*
ACTCACTCAACCTGGGTGTGATG

mismatches: 5
bulges: 2

View larger
pre-miRNA
GAGGAGCATCTCGAAAATGGCGGTCACGTGGACTCACTCAACCTGGGTGTGATGCTTGCCTGTGTATCAGGCCCTAGCGGTCATCACAACCTTTTTGAGT
GAGCGA
ACGCGACTGTTTTATCGACCATATCCA


dot-bracket secondary structure
..(((.....((((....(((((((.(((...(((((((((...((((((((((((.(((((.....)))))...)))....))))).))))..))))))
)))...
))).)))))))...)))).....))).



SIMILARITIES
miRBase nvi-mir-307: 0.0000000000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-67: 3e-36

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references

[1] Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F, Insect Mol Biol. 19:799-805(2010)., "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera"




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