ABOUT THIS RECORDspecies: Apis mellifera
miRNA family: mir-124
source: miRBase, original name: ame-mir-124 (MI0001577)
Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGGCACGCGGTGAATGCCAAG miRNA* TTGCGTTCACTGCGGGCTTCCATG mismatches: 5 bulges: 1 |
pre-miRNA
TGCTCCTTGCGTTCACTGCGGGCTTCCATGTGCCAACTTTTCAAAATTCATAAGGCACGCGGTGAATGCCAAGAGCG
dot-bracket secondary structure
.((((...((((((((((((.((((..(((..................))).)))).))))))))))))...)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: array, RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
TGCTCCTTGCGTTCACTGCGGGCTTCCATGTGCCAACTTTTCAAAATTCATAAGGCACGCGGTGAATGCCAAGAGCG
dot-bracket secondary structure
.((((...((((((((((((.((((..(((..................))).)))).))))))))))))...)))).
SIMILARITIES| miRBase nvi-mir-124: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-124: 4e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: array, RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
