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Species belonging to selected taxon:
Nasonia vitripennis
,
Nasonia giraulti
,
Bombus terrestris
,
Solenopsis invicta
,
Apis mellifera
ABOUT THIS RECORD
ID:
MNEST035368
species:
Apis mellifera
miRNA family:
mir-125
source:
miRBase, original name:
ame-mir-125
(
MI0001578
)
Taxonomy by NCBI:
Apis mellifera
Apis
Apini
Apinae
Apidae
Apoidea
Aculeata
Apocrita
Hymenoptera
Endopterygota
Neoptera
Pterygota
Dicondylia
Insecta
Hexapoda
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCCCTGAGACCCTAACTTGTGA
miRNA*
ACAGGCTAGATTCTCTGGTAT
mismatches:
5
bulges:
1
View larger
pre-miRNA
GTAAAGCCTGCCGCGTCGCCGGT
CCCCTGAGACCCTAACTTGTGA
CGTCGCGACCGATATCTC
ACAGGCTAGATTCTCTGGTAT
TGGCGATGAGTGCTGC
CTTTTGC
dot-bracket secondary structure
(((((((..(((.((((((((((
.((..((((..(((.(((((((
.((((....))))...))
))))).)))..)))).)).))
)))))))).).)).))
..)))))
SIMILARITIES
miRBase
nlo-mir-125
:
5e-43
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
lin-4: 8e-33
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
array
references
[
1
] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG,
Genome Biol. 8:R97(2007).
,
"Computational and transcriptional evidence for microRNAs in the honey bee genome"