miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Nasonia vitripennis, Nasonia giraulti, Bombus terrestris, Solenopsis invicta, Apis mellifera



ABOUT THIS RECORD

ID: MNEST035424
species: Apis mellifera
miRNA family: mir-3718
source: miRBase, original name: ame-mir-3718b (MI0016156)

Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGGACAGGACAGGGGACAGA

miRNA*
TGCCCTACCCTATCCTGATCCGATA

mismatches: 5
bulges: 3

View larger
pre-miRNA
TTCGATTCAGTACCGATTCTCACTATCGGGACAGGACAGGGGACAGAATGGTTATACCGAAATGGCCCTGCCCTACCCTATCCTGATCCGATAATGTAAA
TCGGGAACGAC


dot-bracket secondary structure
.(((.(((....((((((..((.(((((((.(((((.((((..(((...((((((......))))))))).....)))).))))).))))))).))..))
)))))))))).



SIMILARITIES
miRBase ame-mir-3718a: 2e-58

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ame-mir-3718a from miRBase (MNEST035423)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references

[1] Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F, Insect Mol Biol. 19:799-805(2010)., "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera"




Liczniki na strone;