ABOUT THIS RECORDspecies: Nasonia vitripennis
miRNA family: mir-2
source: miRBase, original name: nvi-mir-13b (MI0014726)
Taxonomy by NCBI:
Nasonia vitripennis Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATCACAGCCATTTTTGACGAGT miRNA* CGTCAAATTGGTTGTGGCGTG mismatches: 4 bulges: 1 |
pre-miRNA
AGAGCGCGATCCGATCGTCAAATTGGTTGTGGCGTGTTGTCTAGATTTTCATATCACAGCCATTTTTGACGAGTTGGATCATGGCTTGCGAT
dot-bracket secondary structure
.((((..(((((((((((((((.((((((((..(((..((....))...)))..))))))))..)))))))).)))))))...)))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van, Science. 327:343-348(2010)., "Functional and evolutionary insights from the genomes of three parasitoid Nasonia species"
AGAGCGCGATCCGATCGTCAAATTGGTTGTGGCGTGTTGTCTAGATTTTCATATCACAGCCATTTTTGACGAGTTGGATCATGGCTTGCGAT
dot-bracket secondary structure
.((((..(((((((((((((((.((((((((..(((..((....))...)))..))))))))..)))))))).)))))))...)))).....
SIMILARITIES| miRBase ame-mir-13b: 8e-20 PMRD no hits microPC no hits | UniProt no hits RFAM mir-2: 0.000000000000006 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van, Science. 327:343-348(2010)., "Functional and evolutionary insights from the genomes of three parasitoid Nasonia species"
