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Species belonging to selected taxon:
Bombus terrestris
,
Apis mellifera
ABOUT THIS RECORD
ID:
MNEST035372
species:
Apis mellifera
miRNA family:
mir-190
source:
miRBase, original name:
ame-mir-190
(
MI0005750
)
Taxonomy by NCBI:
Apis mellifera
Apis
Apini
Apinae
Apidae
Apoidea
Aculeata
Apocrita
Hymenoptera
Endopterygota
Neoptera
Pterygota
Dicondylia
Insecta
Hexapoda
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGATATGTTTGATATTCTTGGTTGTT
miRNA*
CGACCAGGAATCAAACATATTATTA
mismatches:
1
bulges:
3
View larger
pre-miRNA
CAAACAAGTCGTCTGGTTTCCGTA
AGATATGTTTGATATTCTTGGTTGTT
TTTTAAAGAAT
CGACCAGGAATCAAACATATTATTA
TGGTGGTCAGAAAA
dot-bracket secondary structure
...........((((..(.(((((
(((((((((((((..(((((((((.(
((.....))).
))))))))))))))))))))).)))
))).)..))))...
SIMILARITIES
miRBase
aae-mir-190
:
0.00000000002
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-190: 1e-43
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
RTPCR
references
[
1
] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG,
Genome Biol. 8:R97(2007).
,
"Computational and transcriptional evidence for microRNAs in the honey bee genome"