ABOUT THIS RECORDspecies: Arachis ipaensis
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Arachis ipaensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 4 bulges: 0 |
pre-miRNA
GAATTTGTAAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAAATTTGGCTGTGGAATCCTACACAAAGCAAGAATCGGGCGATAAACCT
CTGCATCCAGCGCTCCACTTTGCCTCTTT
dot-bracket secondary structure
......((((((((.(((..(((((.((((.((((.((((.((..(((.((...((((...((((....)))).)))).)).)))..)).)))).)))).
)))).))))).))).))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GAATTTGTAAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAAATTTGGCTGTGGAATCCTACACAAAGCAAGAATCGGGCGATAAACCT
CTGCATCCAGCGCTCCACTTTGCCTCTTT
dot-bracket secondary structure
......((((((((.(((..(((((.((((.((((.((((.((..(((.((...((((...((((....)))).)))).)).)))..)).)))).)))).
)))).))))).))).))))))))......
SIMILARITIES| miRBase vvi-MIR162: 4e-16 PMRD vvi-miR162: 4e-16 microPC miR162: 2e-27 | UniProt no hits RFAM MIR162_2: 0.00000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
