miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST046028
species: Helianthus petiolaris
source: microPC, original name: miR398

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCTT

miRNA*
 GGAGTGACACTAAGAACACATA

mismatches: 3
bulges: 1
View larger
pre-miRNA
 AGGAGTGACACTAAGAACACATATGGTGGAATTGCTCTTTTACATATATAAAAGGTGCAATGATATGTTGTACTGTACAAATATCCAATGCACATACTTT
TGTTTGTAAAGTCTTGTCGGCAATCCGTATGTGTTCTCAGGTCACCCCTT

dot-bracket secondary structure
(((.(((((.((.(((((((((((((....((((((.(((((((...((((((((((((..(((((.(((((...))))))))))...)))))...))))
))).))))))).......))))))))))))))))))).))))))).))).


SIMILARITIES
miRBase osa-MIR398a: 0.0001

PMRD vvi-miR398a: 0.0001

microPC miR398: 5e-81		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;