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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000883
species: Helianthus petiolaris
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA

miRNA*
GATTCAGCGGTTCATCGATC

mismatches: 3
bulges: 0

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pre-miRNA
TTATTGTCATTTGTGTTCCGTAGAGGATCACTGGATTCAGCGGTTCATCGATCTGTTCCATAATCCTAATGATTAAATGTTCATACGACGATTGAGAGAG
GTGGGAAATGGAATCGATCGATAAACCTCTGCATCCAGTGTTCTTCCTGCTTAGCACGATCTTGTTT


dot-bracket secondary structure
.......((.(((((((..((((((((.((((((((.(((.((((.(((((((.(((((((..(((((....((((.((((.....)))).)))).....
.))))).))))))).))))))).)))).))).)))))))).)))).))))..)))))))...))...



SIMILARITIES
miRBase osa-MIR162a: 0.0000000006

PMRD osa-miR162a: 0.0000000006

microPC miR162: 2e-56
UniProt no hits

RFAM MIR162_2: 0.00000001
most similar mature miRNAs

Identical with: miR162 from microPC (MNEST045991)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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