miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045065
species: Helianthus tuberosus
miRNA family: MIR156
source: microPC, original name: miR156

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC

miRNA*
GCTCATGATCTATCTGTCA

mismatches: 3
bulges: 1

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pre-miRNA
TGACAGAAGAGAGTGAGCACACAAAGGCAAATTGTACCAATTTGTGTTGTATGATTGTTTTGGGTGCTCATGATCTATCTGTCA

dot-bracket secondary structure
.(((((((((..((((((((...(((((((.(..(((.(((....))))))..))))))))..))))))))..))).)))))).


SIMILARITIES
miRBase ath-MIR156a: 0.0000000003

PMRD ath-miR156a: 0.0000000003

microPC miR156: 2e-42
UniProt no hits

RFAM mir-156: 0.000000005

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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