miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045901
species: Helianthus tuberosus
miRNA family: MIR162
source: microPC, original name: miR162

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GGATTCAGCGGTTCATCGATC

mismatches: 3
bulges: 0

View larger
pre-miRNA
CTGGATTCAGCGGTTCATCGATCTGTTCCATAATCCTAATGATTGAATTTCATACGACGATTGAGAGAGAGATACGGGAAAAGGAATCGATCGATAAACC
TCTGCATCCAG


dot-bracket secondary structure
((((((.(((.((((.(((((((.(((((....((((....(((...(((((.........)))))....)))..))))...))))).))))))).))))
.))).))))))



SIMILARITIES
miRBase sbi-MIR162: 0.000000001

PMRD sly-miR162: 0.000000001

microPC miR162: 3e-57
UniProt no hits

RFAM MIR162_2: 0.00000003

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;