miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000896
species: Helianthus tuberosus
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAGCCGTGCCAATATCACG

miRNA*
AGATGTTGGTTCGGTTCAATA

mismatches: 2
bulges: 0

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pre-miRNA
ATGAGAGGGAGCTGTTGAACGAGATGTTGGTTCGGTTCAATAAGAACTCAACGTTCAAATGGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATA
TCACG
TGCATGTTGCTTCTAAAT


dot-bracket secondary structure
......((((((...((.(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).)))))))
)).))
).))....))))))....



SIMILARITIES
miRBase rco-MIR171a: 0.0000000000004

PMRD vvi-miR171c: 0.0000000004

microPC miR171: 2e-43
UniProt no hits

RFAM MIR171_1: 0.000000000007
most similar mature miRNAs

Identical with: miR171 from microPC (MNEST044914)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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