miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST046074
species: Taraxacum officinale
source: microPC, original name: miR398

Taxonomy by NCBI:
Taraxacum officinale Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCGCCCCT

miRNA*
GTGCGCCATGAGAACACATG

mismatches: 1
bulges: 2

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pre-miRNA
AGGTGCGCCATGAGAACACATGTGAAATGTACAATATATTAATTAGGTCATGTCATGTGTTCTCAGGTCGCCCCT

dot-bracket secondary structure
(((.(((((.((((((((((((....(((.((...((....))...)))))..)))))))))))))).))).)))


SIMILARITIES
miRBase vvi-MIR398c: 0.000003

PMRD vvi-miR398c: 0.000003

microPC miR398: 3e-37
UniProt no hits

RFAM MIR398: 0.00006

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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