miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST003148
species: Helianthus annuus
miRNA family: miR3441.2
source: miRNEST

Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAAGAAAAAGAAGTCGTTGA

miRNA*
CATAGCTCACTTGTTTTTGTTC

mismatches: 5
bulges: 1

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pre-miRNA
ATCAGTTCGCTCTGATCGATCCTTCAATCTTTGATTTCCATAGCTCACTTGTTTTTGTTCTTGATTCCATCTTTTCTTCAATTATGTCTAACGCAGCAGT
TTACCACGACGCCCCGAAAACCGAAGAGCCCTGCCAAACCACCACCACCACTGTGAAGGTTGAGCCTGAGGTCGTAGAACAATCCGATCGTGGGTTGTTT
GGTTTCGGGAAGAAGGACGAGGAGGAGAAGAAGTGCTAAGATGCCGTGATCTCGTCCGAGTTTGAACAGAAAGTTCAAGTGACTGAACCCGAACCTGAGG
AGAAGAAAGAAGGTTTGCTTAAGAAATTTCACCGATCTAATAGCAGTTCCAGCAGTTCTAGTGATGAGGAGTGCGAAGATGGAGAGAAGAAGAAGAAAAA
GAAGTCGTTGA
AGGATAAGGTTAAGGAAAAGATCGAAGGGCACAAAGAAA


dot-bracket secondary structure
........(((((((((..(((((.((((((...((((.((.(((..(((.(((((.(((((..(((((((((((((((..(((.((......(((((((
(......)))..(((((((.(((((.(((((.((..((((..(((.......)))..))))..))....(((((..........)))))..))))).)))
)))))))))..(..((((((((.((..................))....))))))))...)((((((.....)))))).)).))).......)).)))..
.)))))))...((.(((((..(((...........)))...)))))..)).(((.((((.......)))).)))..))))))))..))))).))))).))
).))).)).))
))...)))))))))))...))))..))))).........



SIMILARITIES
miRBase no hits

PMRD ptc-miRf12467-akr: 0.0004

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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