miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST046659
species: Helianthus tuberosus
source: microPC, original name: miR319

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTC

miRNA*
GCTCCTTAAAGTCCAATA

mismatches: 2
bulges: 0

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pre-miRNA
GAGCTCCTTAAAGTCCAATAGAAGATCTGAGTGAGAACATAGAGCTGCTAGTTTATGGATCCCTCAAGTCCTATCTTTGTTGATGTATAGGCTTTGTGGC
TTGCATACACTTGGAGCTTTATTACCCTCCTTATGATCCTTTTTTGGATTGAAGGGAGCTC


dot-bracket secondary structure
(((((((((..(((((((.(((.((((((((.(((...((((((((.(.(((.((((.(..((.((((.((((((.........).))))).)))).)).
.).)))).))).).))))))))....))))))).)))).))).)))))))..)))))))))



SIMILARITIES
miRBase sly-MIR159: 0.000002

PMRD sly-miR159: 0.000002

microPC miR159: 4e-88
UniProt no hits

RFAM MIR159: 0.00004

Identical with: miR159 from microPC (MNEST045888)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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