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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000904
species: Helianthus tuberosus
miRNA family: MIR2025
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTGTTCTCAGGTCGCCCCCGC

miRNA*
 AGGTGTGACATGAGAACACAC

mismatches: 5
bulges: 0
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pre-miRNA
 ACCAACAGGTGTGACATGAGAACACACGATATACTTCGATATTTTTCACGTGTTCTCAGGTCGCCCCCGCTGAATTTTCT

dot-bracket secondary structure
.......((.(((((.(((((((((..((.(((......)))...))..))))))))).))))).))....((....)).


SIMILARITIES
miRBase tae-MIR398: 0.000004

PMRD tae-miR2025: 0.000004

microPC miR398: 3e-28		UniProt no hits

RFAM MIR398: 0.000001		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST046312)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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