miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST003148
species: Helianthus annuus
miRNA family: miR3441.2
source: miRNEST

Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAAGAAAAAGAAGTCGTTGA

miRNA*
CATAGCTCACTTGTTTTTGTTC

mismatches: 5
bulges: 1

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pre-miRNA
ATCAGTTCGCTCTGATCGATCCTTCAATCTTTGATTTCCATAGCTCACTTGTTTTTGTTCTTGATTCCATCTTTTCTTCAATTATGTCTAACGCAGCAGT
TTACCACGACGCCCCGAAAACCGAAGAGCCCTGCCAAACCACCACCACCACTGTGAAGGTTGAGCCTGAGGTCGTAGAACAATCCGATCGTGGGTTGTTT
GGTTTCGGGAAGAAGGACGAGGAGGAGAAGAAGTGCTAAGATGCCGTGATCTCGTCCGAGTTTGAACAGAAAGTTCAAGTGACTGAACCCGAACCTGAGG
AGAAGAAAGAAGGTTTGCTTAAGAAATTTCACCGATCTAATAGCAGTTCCAGCAGTTCTAGTGATGAGGAGTGCGAAGATGGAGAGAAGAAGAAGAAAAA
GAAGTCGTTGA
AGGATAAGGTTAAGGAAAAGATCGAAGGGCACAAAGAAA


dot-bracket secondary structure
........(((((((((..(((((.((((((...((((.((.(((..(((.(((((.(((((..(((((((((((((((..(((.((......(((((((
(......)))..(((((((.(((((.(((((.((..((((..(((.......)))..))))..))....(((((..........)))))..))))).)))
)))))))))..(..((((((((.((..................))....))))))))...)((((((.....)))))).)).))).......)).)))..
.)))))))...((.(((((..(((...........)))...)))))..)).(((.((((.......)))).)))..))))))))..))))).))))).))
).))).)).))
))...)))))))))))...))))..))))).........



SIMILARITIES
miRBase no hits

PMRD ptc-miRf12467-akr: 0.0004

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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