miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST003152
species: Helianthus annuus
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCCTGGCTCCCTGTATGCCAT

miRNA*
GGCGTATGAGGAGCCAAGCAT

mismatches: 2
bulges: 0

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pre-miRNA
TATAAGTATATGCCTGGCTCCCTGTATGCCATTTCCAGAGCCCACCAGTATCACCGGTGACCTCCGTGAATGGCGTATGAGGAGCCAAGCATATTCCCCA


dot-bracket secondary structure
.......((((((.(((((((.((((((((((((...(((..((((.((...)).))))..)))...)))))))))))).))))))).))))))......



SIMILARITIES
miRBase vvi-MIR160e: 9e-20

PMRD vvi-miR160f: 9e-20

microPC miR160: 4e-19
UniProt no hits

RFAM mir-160: 1e-16
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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