miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST003168
species: Helianthus annuus
miRNA family: MIRf1335
source: miRNEST

Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GATGATGACGTTGGCGGTGAT

miRNA*
CATTGCGACGTTGCGTACA

mismatches: 3
bulges: 2

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pre-miRNA
GCGTGATTGATGATGATGACGTTGGCGGTGATAAACTTTTTGGTGGTGGTGGTAGTGGTGATTCATTATTTGCGGACCCCACTTGGCGGGCATCATCTCC
CGAGCTTGACGTATCTGATTTGTTTGGATATAATCTCGGAACTGGAGCGTCGGATGGTATACCCAAAAACTCAGTTGGTTACGTCGGATATAGTGTCACG
AATAGATCAAATAGAGGTATCGCTGCGTAGGAAGTTTGCTAAATGGAGATATGCAGTTATGAAGATGAAGAAAGATTGAAGGATTTTGTGAATTCATAAA
ATACACCCCACGGCAAAAGGTACATTGCGACGTTGCGTACATTTGGTTA


dot-bracket secondary structure
........(((((((.((((((((.(((((....((((((((((((.(((((((((((....))))))).((((....(((.(((((((((.((.(((.(
((((.((...((((((((.....)))))))))).)))))....)))(((.(((.((((((.........(((..((((((...((((((.....))).))
)...))))))...)))))))))))))))..)).))))))))).))).....)))).(((((((..((....((((((....)))))).))..))))))).
...))))))))..)))))))).)))))))))))))))).))))......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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