miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045882
species: Helianthus petiolaris
source: microPC, original name: miR166

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCC

miRNA*
GAATGTTGTCTGGCTCGAGA

mismatches: 4
bulges: 0

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pre-miRNA
GGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATAATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGATCAATGATTA
AAGATTAGAATCTTGTGTTGTCGGACCAGGCTTCATTCCC


dot-bracket secondary structure
(((((((..((((((..(((.(.(((((((....(((((((((((..(((..(((((.........))))).(((((((((....))))))))).)))))
)))))).)))))))))).).)))..))))))..)))))))



SIMILARITIES
miRBase sly-MIR166b: 0.0000001

PMRD sly-miR166b: 0.0000001

microPC miR166: 1e-75
UniProt no hits

RFAM mir-166: 0.000002

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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