miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045991
species: Helianthus petiolaris
miRNA family: MIR162
source: microPC, original name: miR162

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GGATTCAGCGGTTCATCGATC

mismatches: 3
bulges: 0

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pre-miRNA
CTGGATTCAGCGGTTCATCGATCTGTTCCATAATCCTAATGATTAAATGTTCATACGACGATTGAGAGAGGTGGGAAATGGAATCGATCGATAAACCTCT
GCATCCAG


dot-bracket secondary structure
((((((.(((.((((.(((((((.(((((((..(((((....((((.((((.....)))).))))......))))).))))))).))))))).)))).))
).))))))



SIMILARITIES
miRBase sbi-MIR162: 0.000000001

PMRD osa-miR162a: 0.000000001

microPC miR162: 2e-55
UniProt no hits

RFAM MIR162_2: 0.00000002

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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