miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000877
species: Helianthus petiolaris
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGACACTAAGAACACATA

mismatches: 2
bulges: 1
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pre-miRNA
 GTACAAATATCCAATAAGAGCATTTCTCCACAGGAGTGACACTAAGAACACATATGGTGGAATTGCTCTTTTACATATATAAAAGGTGCAATGATATGTT
GTACTGTACAAATATCCAATGCACATACTTTTGTTTGTAAAGTCTTGTCGGCAATCCGTATGTGTTCTCAGGTCACCCCTTTGGAGCACCATGTTTCCTT
TTTTATCGAT

dot-bracket secondary structure
.................((((((..(((((.(((.(((((.((.(((((((((((((....((((((.(((((((...((((((((((((.((((((.((
(((...))))))))).)).)))))...))))))).))))))).......))))))))))))))))))).))))))).))).)))))....))))))....
..........


SIMILARITIES
miRBase vvi-MIR398a: 0.00000004

PMRD vvi-miR398a: 0.00000004

microPC miR398: 2e-81		UniProt no hits

RFAM MIR398: 0.0000008		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST046703)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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