miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045065
species: Helianthus tuberosus
miRNA family: MIR156
source: microPC, original name: miR156

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC

miRNA*
GCTCATGATCTATCTGTCA

mismatches: 3
bulges: 1

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pre-miRNA
TGACAGAAGAGAGTGAGCACACAAAGGCAAATTGTACCAATTTGTGTTGTATGATTGTTTTGGGTGCTCATGATCTATCTGTCA

dot-bracket secondary structure
.(((((((((..((((((((...(((((((.(..(((.(((....))))))..))))))))..))))))))..))).)))))).


SIMILARITIES
miRBase ath-MIR156a: 0.0000000003

PMRD ath-miR156a: 0.0000000003

microPC miR156: 2e-42
UniProt no hits

RFAM mir-156: 0.000000005

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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