miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST046312
species: Helianthus tuberosus
source: microPC, original name: miR398

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGTTCTCAGGTCGCCCC

miRNA*
GTGTGACATGAGAACACAC

mismatches: 2
bulges: 1

View larger
pre-miRNA
GGTGTGACATGAGAACACACGATATACTTCGATATTTTTCACGTGTTCTCAGGTCGCCCC

dot-bracket secondary structure
((.(((((.(((((((((..((......))((......))..))))))))).))))))).


SIMILARITIES
miRBase rco-MIR398b: 0.0002

PMRD ptc-miR398b: 0.0006

microPC miR398: 8e-19
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;