miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000890
species: Helianthus tuberosus
miRNA family: MIRf319
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GATGAGCTCTTGAAAAGAAAC

miRNA*
TTATTTTCTTGCTTCTCCA

mismatches: 4
bulges: 2

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pre-miRNA
CAGTCTACTGCACCGGAGGAAGATGAGCTCTTGAAAAGAAACACCGATTGCGTTTATTTTCTTGCTTCTCCATTAACCTGCAAAAAGGGA

dot-bracket secondary structure
...(((.(((...))).))).((.((((....(((((.((((.........)))).)))))..)))).))......(((......)))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q0J952|C3H32_ORYSJ: 0.000003

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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