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Species belonging to selected taxon:

Xenopus laevis, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum



ABOUT THIS RECORD

ID: MNEST009460
species: Rana catesbeiana
miRNA family: miR-1933
source: miRNEST

Taxonomy by NCBI:
Rana catesbeiana Aquarana Aquarana/sylvatica group Novirana Rana Raninae Ranidae Ranoidea Neobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCAGGACAATCAGGGTGACTC

miRNA*
TTTCCTTTAATTTCCTTACC

mismatches: 5
bulges: 1

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pre-miRNA
ACGTGTATGTCCCATTTGGGGAGATTTCCTTTAATTTCCTTACCAGTAGAAGTAATGGGGTTTCAAAGAGGAGCATAGAATTTTGAATGTCCCACCACCA
ATCACCATCATCAATTCTGGAAGTCCCAATACTACTGGTCACCAGGACAATCAGGGTGACTCTCACCAACGGGTGACACAGCGATAAAATC


dot-bracket secondary structure
.(((...((((((..((((.((((.((.((((.(((((((.((((((...((((.(((((((((..((((.............(((.((.........))
.)))..........)))).))))))))).))))))))))....)))).))).)))).)).)))).))))..)).))))..)))........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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