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Species belonging to selected taxon:

Xenopus laevis, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum



ABOUT THIS RECORD

ID: MNEST009466
species: Rana catesbeiana
miRNA family: miR-1638
source: miRNEST

Taxonomy by NCBI:
Rana catesbeiana Aquarana Aquarana/sylvatica group Novirana Rana Raninae Ranidae Ranoidea Neobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTAGTTTGTGTTGTGTGTTTT

miRNA*
AGCCAAGTACACAGTCTGTCC

mismatches: 3
bulges: 2

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pre-miRNA
CCTATCTATGAAAGCCAAGTACACAGTCTGTCCAAATTGAAATCCACAATTGGTGGCTTGTTTGAAAAGTGAATTATTTTTTGCTATAAAACAATATCAA
AGCGGTGTAACATTTAGCTTGATGTTGCCCATTTAAGTGAATTTACCAATGCACATGCAACAAATCTTTTTAATATGGGTAGTTTGTGTTGTGTGTTTTT
TTTTTTAA


dot-bracket secondary structure
.........((((((((...((((((.(((((((.(((((((......((((((((.((((((....((((((......))))))...))))))..((((
((.((.((((((((......)))))))))).)))...)))..)))))))).................))))))).))))))).))))))..)).))))))
........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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