miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bombyx mori



ABOUT THIS RECORD

ID: MNEST035554
species: Bombyx mori
miRNA family: mir-279
source: miRBase, original name: bmo-mir-279c (MI0012299)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACTAGATCCATACTCGTCTG

miRNA*
GGCGAGTTTGCTTCTGGTTCATG

mismatches: 5
bulges: 1

View larger
pre-miRNA
TGATATTTGTGGGCGAGTTTGCTTCTGGTTCATGTTTTATATTGATCATGACTAGATCCATACTCGTCTGCAGCCATCAA

dot-bracket secondary structure
((((..(((..(((((((.((..((((((.((((.((......)).))))))))))..)).)))))))..)))..)))).


SIMILARITIES
miRBase tca-mir-279b: 0.0000009

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-996: 6e-39

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"




Liczniki na strone;