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Species belonging to selected taxon:

Bombyx mori, Antheraea assama, Samia cynthia ricini



ABOUT THIS RECORD

ID: MNEST035544
species: Bombyx mori
miRNA family: mir-252
source: miRBase, original name: bmo-mir-252 (MI0010621)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTAAGTACTAGTGCCGCAGGAG

miRNA*
CCTGCTGCCTAAGTGCTTATCA

mismatches: 2
bulges: 2

View larger
pre-miRNA
AACTAAACCTTGTTCCTAAGTACTAGTGCCGCAGGAGCGTTTTGTAGTATCTCCTGCTGCCTAAGTGCTTATCAATGAGGGTTTA

dot-bracket secondary structure
.......(((..((..((((((((((.((.(((((((.((........))))))))).)))).))))))))..))..))).....


SIMILARITIES
miRBase ngi-mir-252: 0.00000002

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-252: 7e-42

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Griffiths-Jones S, Unpublished (2009).,
[2] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"




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