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Species belonging to selected taxon:

Bombyx mori, Antheraea assama, Samia cynthia ricini



ABOUT THIS RECORD

ID: MNEST035551
species: Bombyx mori
source: miRBase, original name: bmo-mir-278 (MI0010006)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGTGGGATCTTCGTCCGTTT

miRNA*
CCGGACGAACTTCCCAGCTCGGCC

mismatches: 4
bulges: 2

View larger
pre-miRNA
GTATCAAGTGCTACGCCCGGACGAACTTCCCAGCTCGGCCGACAATCAGGGGTCGGTGGGATCTTCGTCCGTTTGTATCGCTTATAC

dot-bracket secondary structure
((((.(((((.((((..((((((((..(((((.(.(((((..........)))))))))))..))))))))..)))).)))))))))


SIMILARITIES
miRBase isc-mir-278: 0.0003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-278: 3e-41

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
deep sequencing data evidence

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
[2] Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J, PLoS One. 3:e2997(2008)., "The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages"




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