miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bombyx mori, Antheraea assama, Samia cynthia ricini



ABOUT THIS RECORD

ID: MNEST035576
species: Bombyx mori
source: miRBase, original name: bmo-mir-989 (MI0012205)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGTGATGTGACGTAGTGGAA

miRNA*
CCATTACCTCACAGTCACGT

mismatches: 5
bulges: 1

View larger
pre-miRNA
GGTTCAGGGTTGAAATGGCCATTACCTCACAGTCACGTGGTCATGATGGTACAACGTGTGATGTGACGTAGTGGAAGTCTCGACCTGGATA

dot-bracket secondary structure
.(((((((.((((.((..(((((((.(((((..(((((.(((......).)).)))))...))))).)))))))..)).))))))))))).


SIMILARITIES
miRBase dme-mir-989: 0.0003

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa, RTPCR

references

[1] Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J, Genomics. 94:438-444(2009)., "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome"
[2] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
[3] Huang Y, Zou Q, Tang SM, Wang LG, Shen XJ, Mol Biol Rep. 37:3171-3176(2010)., "Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.)"




Liczniki na strone;