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Species belonging to selected taxon:

Bombyx mori, Antheraea assama, Samia cynthia ricini



ABOUT THIS RECORD

ID: MNEST035601
species: Bombyx mori
miRNA family: mir-2733
source: miRBase, original name: bmo-mir-2733f (MI0013856)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACTGGGTATGTAATGACAGT

miRNA*
AGTTATTACTAACTCGGTAGACA

mismatches: 3
bulges: 1

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pre-miRNA
ACGTCTACATTGCTAATCTGTCTATAAAAGACAGTTATTACTAACTCGGTAGACACGTCACTGTGTCACTGGGTATGTAATGACAGTCGTTGATAGATAA
TCGCGTCGTACCAAACGT


dot-bracket secondary structure
((((.(((..(((.....(((((((....(((.((((((((..(((((((.((((((....)))))))))))))..)))))))).)))....))))))).
..)))..)))....))))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLID

references

[1] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
[2] Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R, BMC Genomics. 11:52(2010)., "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development"




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