ABOUT THIS RECORDspecies: Bombyx mori
miRNA family: mir-2733
source: miRBase, original name: bmo-mir-2733f (MI0013856)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACTGGGTATGTAATGACAGT miRNA* AGTTATTACTAACTCGGTAGACA mismatches: 3 bulges: 1 |
pre-miRNA
ACGTCTACATTGCTAATCTGTCTATAAAAGACAGTTATTACTAACTCGGTAGACACGTCACTGTGTCACTGGGTATGTAATGACAGTCGTTGATAGATAA
TCGCGTCGTACCAAACGT
dot-bracket secondary structure
((((.(((..(((.....(((((((....(((.((((((((..(((((((.((((((....)))))))))))))..)))))))).)))....))))))).
..)))..)))....))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLID
references
[1] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
[2] Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R, BMC Genomics. 11:52(2010)., "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development"
ACGTCTACATTGCTAATCTGTCTATAAAAGACAGTTATTACTAACTCGGTAGACACGTCACTGTGTCACTGGGTATGTAATGACAGTCGTTGATAGATAA
TCGCGTCGTACCAAACGT
dot-bracket secondary structure
((((.(((..(((.....(((((((....(((.((((((((..(((((((.((((((....)))))))))))))..)))))))).)))....))))))).
..)))..)))....))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLID
references
[1] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
[2] Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R, BMC Genomics. 11:52(2010)., "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development"
