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Species belonging to selected taxon:

Bombyx mori



ABOUT THIS RECORD

ID: MNEST035513
species: Bombyx mori
miRNA family: mir-1
source: miRBase, original name: bmo-mir-1b (MI0012994)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGGAAGTAAGGAAGCACGGAA

miRNA*
CCATACTTCTTTACATTCCATA

mismatches: 5
bulges: 0

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pre-miRNA
CCGCGCAGCTCCATACTTCTTTACATTCCATATGATTACAATGACTATGGGAAGTAAGGAAGCACGGAACTTGCGCAAG

dot-bracket secondary structure
..((((((.(((...(((((((((.(((((((.............))))))).)))))))))...))).).)))))...


SIMILARITIES
miRBase bmo-mir-1a: 1e-39

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-1: 6e-36

Identical with: bmo-mir-1a from miRBase (MNEST035512)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"




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