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Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024646
species: Branchiostoma floridae
miRNA family: mir-9
source: miRBase, original name: bfl-mir-9-1 (MI0010520)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTTGGTTATCTAGCTGTATG

miRNA*
TAAAGCTAGGTAACCAAAACA

mismatches: 1
bulges: 1

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pre-miRNA
GTGTTGTCTTTGGTTATCTAGCTGTATGAGAGTCTTTTGTCACCATAAAGCTAGGTAACCAAAACAACAACCATTCCCCCTA

dot-bracket secondary structure
.((((((.(((((((((((((((.((((.(.(.(....).).))))).))))))))))))))))))))).............


SIMILARITIES
miRBase bfl-mir-9-1: 2e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 1e-27

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"




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