miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024693
species: Branchiostoma floridae
miRNA family: mir-8
source: miRBase, original name: bfl-mir-200b (MI0010036)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAATACTGTCTGGTAATGATGTT

miRNA*
CATCTTACCAGGCAGCATTTAGT

mismatches: 2
bulges: 2

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pre-miRNA
ACAGTTTGGGATCTCGGCAACATCTTACCAGGCAGCATTTAGTTTTTGAAAGGAATACTAATACTGTCTGGTAATGATGTTGGTGGGGTTCAAACAGT

dot-bracket secondary structure
...((((((.((((((.((((((((((((((((((...(((((((((....)))).)))))..))))))))))).))))))).))))))))))))...


SIMILARITIES
miRBase sko-mir-200: 0.000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-8: 8e-36

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




Liczniki na strone;