ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-8
source: miRBase, original name: bfl-mir-200c (MI0010037)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAACACTGTCTGGTAATGATG miRNA* TCTTACCTGGCAGGTTTAGA mismatches: 3 bulges: 1 |
pre-miRNA
ATCTAACATGGCGGAGTTGTGTCATCTTACCTGGCAGGTTTAGATGGTTCTGGGATCTAACACTGTCTGGTAATGATGACGGGACTCCGCACATA
dot-bracket secondary structure
.......(((((((((((.((((((((((((.(((((..((((((.........))))))..))))).))))).))))))).)))))))).))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
ATCTAACATGGCGGAGTTGTGTCATCTTACCTGGCAGGTTTAGATGGTTCTGGGATCTAACACTGTCTGGTAATGATGACGGGACTCCGCACATA
dot-bracket secondary structure
.......(((((((((((.((((((((((((.(((((..((((((.........))))))..))))).))))).))))))).)))))))).))).
SIMILARITIES| miRBase cin-mir-141: 0.00007 PMRD no hits microPC no hits | UniProt no hits RFAM mir-8: 5e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
